Transcript: ENSMUST00000022203.11 Dimt1-201

Description

DIM1 rRNA methyltransferase and ribosome maturation factor [Source:MGI Symbol;Acc:MGI:1913504]

Gene Synonyms

1500031M22Rik

Location

Chromosome 13: 107,083,603-107,098,361 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 13 domains and features, is associated with 1051 variant alleles and maps to 240 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021692.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022203.11	Dimt1-201	4208	313aa	ENSMUSP00000022203.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26758	Q9D0D4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000479863.1	Dimt1-206	4136	289aa	ENSMUSP00000258226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000479870.1	Dimt1-213	4115	282aa	ENSMUSP00000258233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000479866.1	Dimt1-209	4079	270aa	ENSMUSP00000258229.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000479862.1	Dimt1-205	4205	113aa	ENSMUSP00000258225.1	Nonsense mediated decay		-	-
ENSMUST00000479865.1	Dimt1-208	3611	113aa	ENSMUSP00000258228.1	Nonsense mediated decay		-	-
ENSMUST00000479864.1	Dimt1-207	3575	243aa	ENSMUSP00000258227.1	Nonsense mediated decay		-	-
ENSMUST00000479867.1	Dimt1-210	2749	72aa	ENSMUSP00000258230.1	Nonsense mediated decay		-	-
ENSMUST00000555236.1	Dimt1-214	2483	101aa	ENSMUSP00000333599.1	Nonsense mediated decay		-	-
ENSMUST00000479868.1	Dimt1-211	1955	174aa	ENSMUSP00000258231.1	Nonsense mediated decay		-	-
ENSMUST00000479869.1	Dimt1-212	1313	71aa	ENSMUSP00000258232.1	Nonsense mediated decay		-	-
ENSMUST00000555237.1	Dimt1-215	1099	113aa	ENSMUSP00000333600.1	Nonsense mediated decay		-	-
ENSMUST00000224052.2	Dimt1-204	767	71aa	ENSMUSP00000152938.2	Nonsense mediated decay		A0A286YCE5	-
ENSMUST00000223870.2	Dimt1-203	3338	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000223851.2	Dimt1-202	644	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 4,208 bps, Translation length: 313 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9D0D4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26758

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000022203.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000022203.11 Dimt1-201

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Transcript: ENSMUST00000022203.11 Dimt1-201

Summary

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