Transcript: ENSMUST00000020699.5 Castor1-201

Description

cytosolic arginine sensor for mTORC1 subunit 1 [Source:MGI Symbol;Acc:MGI:1919212]

Gene Synonyms

2410008K03Rik, Gatsl3

Location

Chromosome 11: 4,168,098-4,172,421 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 650 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000020424.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000020699.5	Castor1-201	1713	331aa	ENSMUSP00000020699.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24381	Q9CWQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000559331.1	Castor1-208	1689	282aa	ENSMUSP00000337694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000489641.1	Castor1-202	1682	428aa	ENSMUSP00000268004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000489643.1	Castor1-204	1797	112aa	ENSMUSP00000268006.1	Nonsense mediated decay		-	-
ENSMUST00000489644.1	Castor1-205	1605	52aa	ENSMUSP00000268007.1	Nonsense mediated decay		-	-
ENSMUST00000559330.1	Castor1-207	1601	71aa	ENSMUSP00000337693.1	Nonsense mediated decay		-	-
ENSMUST00000489645.1	Castor1-206	1571	255aa	ENSMUSP00000268008.1	Nonsense mediated decay		-	-
ENSMUST00000489642.1	Castor1-203	1534	106aa	ENSMUSP00000268005.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,713 bps, Translation length: 331 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CWQ8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24381

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000020699.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000020699.5 Castor1-201

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Transcript: ENSMUST00000020699.5 Castor1-201

Summary

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