Transcript: ENSMUST00000020586.8 Slc22a4-201

Description

solute carrier family 22 (organic cation transporter), member 4 [Source:MGI Symbol;Acc:MGI:1353479]

Gene Synonyms

Octn1

Location

Chromosome 11: 53,873,943-53,919,651 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 43 domains and features, is associated with 2912 variant alleles and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000020334.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000020586.8	Slc22a4-201	3004	553aa	ENSMUSP00000020586.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24689	Q9Z306	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000521715.1	Slc22a4-208	2971	542aa	ENSMUSP00000300078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000521713.1	Slc22a4-206	5127	196aa	ENSMUSP00000300076.1	Nonsense mediated decay		-	-
ENSMUST00000521714.1	Slc22a4-207	5063	196aa	ENSMUSP00000300077.1	Nonsense mediated decay		-	-
ENSMUST00000521716.1	Slc22a4-209	4913	135aa	ENSMUSP00000300079.1	Nonsense mediated decay		-	-
ENSMUST00000521720.1	Slc22a4-213	4781	196aa	ENSMUSP00000300083.1	Nonsense mediated decay		-	-
ENSMUST00000521711.1	Slc22a4-204	3390	196aa	ENSMUSP00000300074.1	Nonsense mediated decay		-	-
ENSMUST00000521712.1	Slc22a4-205	3028	196aa	ENSMUSP00000300075.1	Nonsense mediated decay		-	-
ENSMUST00000521717.1	Slc22a4-210	2998	137aa	ENSMUSP00000300080.1	Nonsense mediated decay		-	-
ENSMUST00000521718.1	Slc22a4-211	2950	485aa	ENSMUSP00000300081.1	Nonsense mediated decay		-	-
ENSMUST00000521719.1	Slc22a4-212	2816	196aa	ENSMUSP00000300082.1	Nonsense mediated decay		-	-
ENSMUST00000521721.1	Slc22a4-214	2408	184aa	ENSMUSP00000300084.1	Nonsense mediated decay		-	-
ENSMUST00000521722.1	Slc22a4-215	2231	135aa	ENSMUSP00000300085.1	Nonsense mediated decay		-	-
ENSMUST00000146351.2	Slc22a4-202	678	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000154369.2	Slc22a4-203	566	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,004 bps, Translation length: 553 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z306

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24689

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000020586.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000020586.8 Slc22a4-201

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Transcript: ENSMUST00000020586.8 Slc22a4-201

Summary

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