Transcript: ENSMUST00000017530.4 Traf4-201

Description

TNF receptor associated factor 4 [Source:MGI Symbol;Acc:MGI:1202880]

Gene Synonyms

A530032M13Rik, CART1, msp2

Location

Chromosome 11: 78,050,226-78,056,415 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 29 domains and features, is associated with 599 variant alleles and maps to 221 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000017386.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000017530.4	Traf4-201	2078	470aa	ENSMUSP00000017530.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25090	Q61382	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000483865.1	Traf4-205	4308	62aa	ENSMUSP00000262228.1	Nonsense mediated decay		-	-
ENSMUST00000483864.1	Traf4-204	4225	64aa	ENSMUSP00000262227.1	Nonsense mediated decay		-	-
ENSMUST00000483866.1	Traf4-206	4068	166aa	ENSMUSP00000262229.1	Nonsense mediated decay		-	-
ENSMUST00000483867.1	Traf4-207	2960	240aa	ENSMUSP00000262230.1	Nonsense mediated decay		-	-
ENSMUST00000568362.1	Traf4-212	2873	102aa	ENSMUSP00000346725.1	Nonsense mediated decay		-	-
ENSMUST00000483869.1	Traf4-209	2500	79aa	ENSMUSP00000262232.1	Nonsense mediated decay		-	-
ENSMUST00000483871.1	Traf4-211	2160	69aa	ENSMUSP00000262234.1	Nonsense mediated decay		-	-
ENSMUST00000483868.1	Traf4-208	2057	53aa	ENSMUSP00000262231.1	Nonsense mediated decay		-	-
ENSMUST00000483870.1	Traf4-210	2055	111aa	ENSMUSP00000262233.1	Nonsense mediated decay		-	-
ENSMUST00000568363.1	Traf4-213	1950	59aa	ENSMUSP00000346726.1	Nonsense mediated decay		-	-
ENSMUST00000149437.8	Traf4-203	3223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000148218.2	Traf4-202	925	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,078 bps, Translation length: 470 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q61382

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25090

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000017530.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000017530.4 Traf4-201

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Transcript: ENSMUST00000017530.4 Traf4-201

Summary

About Us

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