Transcript: ENSMUST00000008748.9 Ubqln4-201

Description

ubiquilin 4 [Source:MGI Symbol;Acc:MGI:2150152]

Gene Synonyms

UBIN

Location

Chromosome 3: 88,460,891-88,478,174 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 42 domains and features, is associated with 1397 variant alleles and maps to 286 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000008604.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000008748.9	Ubqln4-201	4646	596aa	ENSMUSP00000008748.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17479	Q99NB8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000506302.1	Ubqln4-221	4715	619aa	ENSMUSP00000284665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506291.1	Ubqln4-210	4661	601aa	ENSMUSP00000284654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506324.1	Ubqln4-243	4602	552aa	ENSMUSP00000284687.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506309.1	Ubqln4-228	4595	579aa	ENSMUSP00000284672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506321.1	Ubqln4-240	4565	569aa	ENSMUSP00000284684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506287.1	Ubqln4-206	4487	543aa	ENSMUSP00000284650.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506311.1	Ubqln4-230	4433	525aa	ENSMUSP00000284674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506310.1	Ubqln4-229	3527	548aa	ENSMUSP00000284673.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506296.1	Ubqln4-215	3518	550aa	ENSMUSP00000284659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506300.1	Ubqln4-219	3485	547aa	ENSMUSP00000284663.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506290.1	Ubqln4-209	3477	525aa	ENSMUSP00000284653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000506304.1	Ubqln4-223	3419	568aa	ENSMUSP00000284667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000562124.1	Ubqln4-246	7719	315aa	ENSMUSP00000340487.1	Nonsense mediated decay		-	-
ENSMUST00000506317.1	Ubqln4-236	7681	250aa	ENSMUSP00000284680.1	Nonsense mediated decay		-	-
ENSMUST00000562123.1	Ubqln4-245	6693	315aa	ENSMUSP00000340486.1	Nonsense mediated decay		-	-
ENSMUST00000506325.1	Ubqln4-244	6622	250aa	ENSMUSP00000284688.1	Nonsense mediated decay		-	-
ENSMUST00000562126.1	Ubqln4-248	5315	315aa	ENSMUSP00000340489.1	Nonsense mediated decay		-	-
ENSMUST00000506299.1	Ubqln4-218	5194	262aa	ENSMUSP00000284662.1	Nonsense mediated decay		-	-
ENSMUST00000506316.1	Ubqln4-235	4520	553aa	ENSMUSP00000284679.1	Nonsense mediated decay		-	-
ENSMUST00000506297.1	Ubqln4-216	4447	261aa	ENSMUSP00000284660.1	Nonsense mediated decay		-	-
ENSMUST00000506314.1	Ubqln4-233	4372	322aa	ENSMUSP00000284677.1	Nonsense mediated decay		-	-
ENSMUST00000506322.1	Ubqln4-241	4343	250aa	ENSMUSP00000284685.1	Nonsense mediated decay		-	-
ENSMUST00000506294.1	Ubqln4-213	4258	375aa	ENSMUSP00000284657.1	Nonsense mediated decay		-	-
ENSMUST00000506289.1	Ubqln4-208	4247	85aa	ENSMUSP00000284652.1	Nonsense mediated decay		-	-
ENSMUST00000506288.1	Ubqln4-207	3544	315aa	ENSMUSP00000284651.1	Nonsense mediated decay		-	-
ENSMUST00000506306.1	Ubqln4-225	3472	554aa	ENSMUSP00000284669.1	Nonsense mediated decay		-	-
ENSMUST00000506319.1	Ubqln4-238	3463	261aa	ENSMUSP00000284682.1	Nonsense mediated decay		-	-
ENSMUST00000506305.1	Ubqln4-224	3432	69aa	ENSMUSP00000284668.1	Nonsense mediated decay		-	-
ENSMUST00000506307.1	Ubqln4-226	3419	36aa	ENSMUSP00000284670.1	Nonsense mediated decay		-	-
ENSMUST00000506295.1	Ubqln4-214	3416	261aa	ENSMUSP00000284658.1	Nonsense mediated decay		-	-
ENSMUST00000506293.1	Ubqln4-212	3384	250aa	ENSMUSP00000284656.1	Nonsense mediated decay		-	-
ENSMUST00000506308.1	Ubqln4-227	3367	322aa	ENSMUSP00000284671.1	Nonsense mediated decay		-	-
ENSMUST00000506313.1	Ubqln4-232	3325	261aa	ENSMUSP00000284676.1	Nonsense mediated decay		-	-
ENSMUST00000506301.1	Ubqln4-220	3292	291aa	ENSMUSP00000284664.1	Nonsense mediated decay		-	-
ENSMUST00000562127.1	Ubqln4-249	3270	372aa	ENSMUSP00000340490.1	Nonsense mediated decay		-	-
ENSMUST00000506312.1	Ubqln4-231	3225	315aa	ENSMUSP00000284675.1	Nonsense mediated decay		-	-
ENSMUST00000562125.1	Ubqln4-247	3120	250aa	ENSMUSP00000340488.1	Nonsense mediated decay		-	-
ENSMUST00000506315.1	Ubqln4-234	3117	120aa	ENSMUSP00000284678.1	Nonsense mediated decay		-	-
ENSMUST00000506323.1	Ubqln4-242	3110	261aa	ENSMUSP00000284686.1	Nonsense mediated decay		-	-
ENSMUST00000506303.1	Ubqln4-222	3105	262aa	ENSMUSP00000284666.1	Nonsense mediated decay		-	-
ENSMUST00000506292.1	Ubqln4-211	3005	262aa	ENSMUSP00000284655.1	Nonsense mediated decay		-	-
ENSMUST00000506298.1	Ubqln4-217	2992	256aa	ENSMUSP00000284661.1	Nonsense mediated decay		-	-
ENSMUST00000506318.1	Ubqln4-237	2962	84aa	ENSMUSP00000284681.1	Nonsense mediated decay		-	-
ENSMUST00000506320.1	Ubqln4-239	2914	253aa	ENSMUSP00000284683.1	Nonsense mediated decay		-	-
ENSMUST00000192962.2	Ubqln4-203	590	45aa	ENSMUSP00000142145.2	Nonsense mediated decay		A0A0A6YXU5	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000192687.2	Ubqln4-202	362	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000194303.6	Ubqln4-204	1379	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000195498.2	Ubqln4-205	871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 4,646 bps, Translation length: 596 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99NB8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17479

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000008748.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000008748.9 Ubqln4-201

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Transcript: ENSMUST00000008748.9 Ubqln4-201

Summary

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