Transcript: ENSMUST00000001703.9 Hoxc8-201

Description

homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]

Gene Synonyms

D130011F21Rik, Hox-3.1

Location

Chromosome 15: 102,898,851-102,902,253 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 22 domains and features, is associated with 496 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000001657.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000001703.9	Hoxc8-201	2056	242aa	ENSMUSP00000001703.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27894	P09025	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000403905.1	Hoxc8-203	1965	157aa	ENSMUSP00000182268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000189484.2	Hoxc8-202	2223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,056 bps, Translation length: 242 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P09025

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27894

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000001703.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000001703.9 Hoxc8-201

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Transcript: ENSMUST00000001703.9 Hoxc8-201

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