Transcript: ENSMUST00000000500.8 Pdgfb-201

Description

platelet derived growth factor, B polypeptide [Source:MGI Symbol;Acc:MGI:97528]

Gene Synonyms

PDGF-B, Sis

Location

Chromosome 15: 79,880,075-79,899,009 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 20 domains and features, is associated with 1513 variant alleles and maps to 295 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000000489.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000000500.8	Pdgfb-201	2944	241aa	ENSMUSP00000000500.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27656	A0A0R4IZW4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229912.2	Pdgfb-204	652	169aa	ENSMUSP00000155133.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHJ1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229795.2	Pdgfb-203	384	49aa	ENSMUSP00000154843.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8W6F2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229168.2	Pdgfb-202	2163	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,944 bps, Translation length: 241 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27656

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000000500.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000000500.8 Pdgfb-201

Summary

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Transcript: ENSMUST00000000500.8 Pdgfb-201

Summary

About Us

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