Description

potassium large conductance calcium-activated channel, subfamily M, alpha member 1 [Source:MGI Symbol;Acc:MGI:99923]

Location
About this transcript

This transcript has 27 exons, is annotated with 29 domains and features, is associated with 22 variations and maps to 35 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Kcnma1-001ENSMUST0000018821049901209aaENSMUSP00000141069
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q3TSL8 NM_001253369
NM_001253371
NP_001240298
NP_001240300
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Kcnma1-207ENSMUST0000017763446051135aaENSMUSP00000136447
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3QMT8 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kcnma1-208ENSMUST0000017909745961132aaENSMUSP00000136568
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3QN27 NM_001253358
NM_001253359
NM_001253360
NM_001253366
NP_001240287
NP_001240288
NP_001240289
NP_001240295
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kcnma1-201ENSMUST0000006578845241108aaENSMUSP00000065293
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6ZSN2 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kcnma1-003ENSMUST0000018828544401239aaENSMUSP00000140275
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9EQ27 NM_001253361
NM_001253362
NM_001253363
NP_001240290
NP_001240291
NP_001240292
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI5APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Kcnma1-202ENSMUST0000007498339741107aaENSMUSP00000074511
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6XW53 Q9EQ27 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Kcnma1-005ENSMUST0000019004437471178aaENSMUSP00000140033
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_001253365
NM_001253367
NM_001253372
NM_001253376
NM_001253377
NM_001253378
NP_001240294
NP_001240296
NP_001240301
NP_001240305
NP_001240306
NP_001240307
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Kcnma1-006ENSMUST0000018899137111236aaENSMUSP00000140751
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9EQ27 NM_001253364
NM_001253373
NM_010610
NP_001240293
NP_001240302
NP_034740
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Kcnma1-204ENSMUST0000011242336641055aaENSMUSP00000108042
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F7BHL0 NM_001253374
NP_001240303
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kcnma1-206ENSMUST0000017209933541118aaENSMUSP00000132204
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6WSZ3 Q9EQ27 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Kcnma1-203ENSMUST0000010083132611086aaENSMUSP00000098393
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A5JHH3 F6V0P5 NM_001253368
NM_001253370
NP_001240297
NP_001240299
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kcnma1-209ENSMUST0000017983631771059aaENSMUSP00000137141
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3QP84 Q9EQ27 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kcnma1-205ENSMUST0000016332231621053aaENSMUSP00000128553
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A5JHH3 E9Q9P4 NM_001253375
NP_001240304
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kcnma1-002ENSMUST00000190339890191aaENSMUSP00000141143
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Kcnma1-004ENSMUST000001909853557650aaENSMUSP00000140154
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSMUSP00000098393.4

Transcript-based displays