Description

brain derived neurotrophic factor [Source:MGI Symbol;Acc:MGI:88145]

About this transcript

This transcript has 2 exons, is annotated with 16 domains and features, is associated with 2 variations and maps to 19 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Bdnf-001ENSMUST000000533174266257aaENSMUSP00000057989
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38193A2AII2 Q541P3 Q99NV8
S5MVY4
NM_007540
NP_031566
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Bdnf-002ENSMUST000001110514125249aaENSMUSP00000106680
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001048139
NP_001041604
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-003ENSMUST000001110474042249aaENSMUSP00000106676
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001285416
NM_001285422
NP_001272345
NP_001272351
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-007ENSMUST000001110453973249aaENSMUSP00000106674
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001048142
NP_001041607
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-006ENSMUST000001110503965249aaENSMUSP00000106679
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001048141
NP_001041606
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-008ENSMUST000001110443854249aaENSMUSP00000106673
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001285421
NP_001272350
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-009ENSMUST000001110433839249aaENSMUSP00000106672
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001285417
NP_001272346
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-004ENSMUST000001110493830249aaENSMUSP00000106678
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001285418
NP_001272347
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-005ENSMUST000001110463819249aaENSMUSP00000106675
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001285419
NP_001272348
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-011ENSMUST000001768933707249aaENSMUSP00000135762
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38194P21237 Q541P3 Q99NV8
S5MVY4
NM_001285420
NP_001272349
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Bdnf-010ENSMUST000001110423905289aaENSMUSP00000106671
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H9H9S8 Q541P3 Q99NV8
S5MVY4
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Protein domains for ENSMUSP00000106674.2

Transcript-based displays