Description

neural cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:97281]

Location
About this transcript

This transcript has 16 exons, is annotated with 49 domains and features, is associated with 18 variations and maps to 27 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Ncam1-001ENSMUST000001935476050848aaENSMUSP00000142275
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS40617A0A0A6YY47 NM_001081445
NM_001113204
NP_001074914
NP_001106675
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P4

PRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ncam1-005ENSMUST000001144762567725aaENSMUSP00000110120
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS40618E9Q589 NM_010875
NP_035005
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ncam1-006ENSMUST0000019425265641089aaENSMUSP00000142331
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YY91 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Ncam1-002ENSMUST000001668113088849aaENSMUSP00000130668
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9QB01 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ncam1-003ENSMUST000001925842525605aaENSMUSP00000141700
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWU2 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Ncam1-004ENSMUST0000019484414649aaENSMUSP00000141730
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWW5 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.

Protein domains for ENSMUSP00000110120.2

Transcript-based displays