Description

neural cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:97281]

Location
About this transcript

This transcript has 18 exons, is annotated with 6 domains and features, is associated with 20 variations and maps to 28 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Ncam1-001ENSMUST000001935476050848aaENSMUSP00000142275
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS40617A0A0A6YY47 NM_001081445
NM_001113204
NP_001074914
NP_001106675
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P4

PRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ncam1-005ENSMUST000001144762567725aaENSMUSP00000110120
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS40618E9Q589 NM_010875
NP_035005
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ncam1-006ENSMUST0000019425265641089aaENSMUSP00000142331
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YY91 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Ncam1-002ENSMUST000001668113088849aaENSMUSP00000130668
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9QB01 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ncam1-003ENSMUST000001925842525605aaENSMUSP00000141700
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWU2 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Ncam1-004ENSMUST0000019484414649aaENSMUSP00000141730
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWW5 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.

Protein domains for ENSMUSP00000130668.3

Transcript-based displays