Description

trichorhinophalangeal syndrome I (human) [Source:MGI Symbol;Acc:MGI:1927616]

Location
About this transcript

This transcript has 6 exons, is annotated with 24 domains and features, is associated with 17 variations and maps to 35 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Trps1-001ENSMUST0000016520198591281aaENSMUSP00000129779
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS27460G3UW90 H7BU26 V9GX39
NM_032000
NP_114389
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Trps1-201ENSMUST0000007793544361281aaENSMUSP00000077089
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS27460G3UW90 H7BU26 V9GX39
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Trps1-003ENSMUST0000018375762021285aaENSMUSP00000139017
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UW90 H7BU26 V9GX39
V9GX74
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Trps1-002ENSMUST000001844585293994aaENSMUSP00000139063
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BU26 V9GXA5 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Trps1-004ENSMUST0000018399736271096aaENSMUSP00000139115
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BU26 Q8K1J0 V9GX39
V9GXE9
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Trps1-005ENSMUST0000018488534921035aaENSMUSP00000138905
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BU26 Q80V18 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Trps1-006ENSMUST000001834213446229aaENSMUSP00000138835
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BU26 Q8BZ62 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Trps1-007ENSMUST00000185183887255aaENSMUSP00000138967
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-V9GX39 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSMUSP00000129779.1

Transcript-based displays