Description

vascular cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:98926]

About this transcript

This transcript has 9 exons, is annotated with 49 domains and features, is associated with 42 variations and maps to 32 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Vcam1-001ENSMUST000000295743469739aaENSMUSP00000029574
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17785Q3UPN1 NM_011693
NP_035823
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Vcam1-002ENSMUST000001964492532345aaENSMUSP00000142876
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q544V4 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Vcam1-003ENSMUST00000196309749237aaENSMUSP00000143260
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Vcam1-004ENSMUST000001970314088No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---

Protein domains for ENSMUSP00000029574.8

Transcript-based displays