Description

collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]

Location
About this transcript

This transcript has 66 exons, is annotated with 41 domains and features, is associated with 67 variations and maps to 93 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Col5a1-001ENSMUST0000002828084061838aaENSMUSP00000028280
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15831B1AWB9 O88207 NM_015734
NP_056549
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Col5a1-002ENSMUST000001454231049349aaENSMUSP00000123532
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A3KGE7 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSMUSP00000028280.7

Transcript-based displays