Description

collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]

Location
About this transcript

This transcript has 66 exons, is annotated with 45 domains and features, is associated with 67 variations and maps to 93 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Col5a1-001ENSMUST0000002828084061838aaENSMUSP00000028280
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15831B1AWB9 O88207 NM_015734
NP_056549
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Col5a1-002ENSMUST000001454231049349aaENSMUSP00000123532
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A3KGE7 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSMUSP00000028280.7

Transcript-based displays