Description

solute carrier family 26, member 6 [Source:MGI Symbol;Acc:MGI:2159728]

About this transcript

This transcript has 21 exons, is annotated with 7 domains and features, is associated with 44 variations and maps to 33 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Slc26a6-005ENSMUST000001925074362629aaENSMUSP00000141336
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WS07 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc26a6-002ENSMUST000001932912725629aaENSMUSP00000142250
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WS07 NM_134420
NP_599252
CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc26a6-201ENSMUST000000983762402735aaENSMUSP00000095979
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A0MQB3 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P5

PRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc26a6-007ENSMUST000001885571985629aaENSMUSP00000140849
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WS07 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc26a6-001ENSMUST0000019140441850aaENSMUSP00000140982
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WSC0 NM_134420
NP_599252
CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc26a6-006ENSMUST000001938741931239aaENSMUSP00000141409
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A6YWP3 -APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc26a6-008ENSMUST000001925591799239aaENSMUSP00000141632
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A6YWP3 -APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc26a6-009ENSMUST00000193825349No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Slc26a6-004ENSMUST000001934633985No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Slc26a6-003ENSMUST000001956462375No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Protein domains for ENSMUSP00000095979.3

Transcript-based displays