Description

interleukin 6 signal transducer [Source:MGI Symbol;Acc:MGI:96560]

About this transcript

This transcript has 15 exons, is annotated with 26 domains and features, is associated with 43 variations and maps to 36 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Il6st-001ENSMUST000001836638678917aaENSMUSP00000138836
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS26773Q00560 Q3TDT5 Q3UQA0
V9GXJ5
NM_010560
NP_034690
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Il6st-201ENSMUST000000707315207917aaENSMUSP00000064205
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS26773Q00560 Q3TDT5 Q3UQA0
V9GXJ5
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Il6st-007ENSMUST000001843112985917aaENSMUSP00000139227
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS26773Q00560 Q3TDT5 Q3UQA0
V9GXJ5
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Il6st-002ENSMUST000001838863004164aaENSMUSP00000138820
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q3TDT5 V9GXJ5 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Il6st-008ENSMUST000001849492571856aaENSMUSP00000138915
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q3TDT5 V9GX00 V9GXJ5
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Il6st-003ENSMUST000001844451870327aaENSMUSP00000139311
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q3TDT5 V9GXJ5 V9GXT4
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Il6st-005ENSMUST00000183829612203aaENSMUSP00000138987
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-V9GX52 V9GXJ5 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Il6st-009ENSMUST0000018386832246aaENSMUSP00000139180
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-V9GXJ5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Il6st-006ENSMUST0000018351320166aaENSMUSP00000139016
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-V9GX73 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Il6st-004ENSMUST000001842763009346aaENSMUSP00000139060
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q3TDT5 V9GXA2 V9GXJ5
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSMUSP00000064205.4

Transcript-based displays