Description

limb region 1 [Source:MGI Symbol;Acc:MGI:1861746]

Location
About this transcript

This transcript has 17 exons, is annotated with 22 domains and features, is associated with 13 variations and maps to 55 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Lmbr1-002ENSMUST000000551954926490aaENSMUSP00000058405
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS19148Q9JIT0 NM_020295
NP_064691
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Lmbr1-201ENSMUST000001791914836462aaENSMUSP00000136160
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3QM78 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Lmbr1-004ENSMUST000001963213422367aaENSMUSP00000143348
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Lmbr1-001ENSMUST000001981052274463aaENSMUSP00000142755
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Lmbr1-005ENSMUST000002005641598313aaENSMUSP00000143316
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Lmbr1-003ENSMUST00000200149714110aaENSMUSP00000142987
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Lmbr1-006ENSMUST00000198367734No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---

Protein domains for ENSMUSP00000058405.4

Transcript-based displays