Description

RIKEN cDNA 1700012B07 gene [Source:MGI Symbol;Acc:MGI:1916574]

About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 20 variations and maps to 19 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
1700012B07Rik-201ENSMUST000001066742035276aaENSMUSP00000102285
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48973Q3V0S8 NM_001162428
NP_001155900
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
1700012B07Rik-001ENSMUST00000020941919263aaENSMUSP00000020941
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48972Q4KKZ5 Q9DAE9 NM_027038
NP_081314
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
1700012B07Rik-002ENSMUST00000143578582188aaENSMUSP00000115395
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AGP8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Transcript-based displays