Gene: Sox10 ENSMUSG00000033006

Description

SRY (sex determining region Y)-box 10 [Source:MGI Symbol;Acc:MGI:98358]

Gene Synonyms

Sox21, gt

Location

Chromosome 15: 79,039,108-79,049,440 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 4 transcripts (splice variants), 266 orthologues, 20 paralogues and is associated with 86 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000230532.2	Sox10-203	2780	466aa	ENSMUSP00000155574.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49668	Q04888	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000040019.5	Sox10-201	2713	466aa	ENSMUSP00000039466.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49668	Q04888	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230261.2	Sox10-202	863	205aa	ENSMUSP00000155639.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VI24	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000230891.2	Sox10-204	982	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Sox10 ENSMUSG00000033006

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Gene: Sox10 ENSMUSG00000033006

Summary

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