Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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Gene: Ccdc110 ENSMUSG00000071104

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Description

coiled-coil domain containing 110 [Source:MGI Symbol;Acc:MGI:2685018]

Gene Synonyms

LOC212392

Location

Chromosome 8: 46,387,656-46,397,182 forward strand.

GRCm39:CM001001.3

About this gene

This gene has 2 transcripts (splice variants) and 9 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000095326.10	Ccdc110-201	2656	848aa	ENSMUSP00000092964.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22282	Q3V125	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000174815.3	Ccdc110-202	633	77aa	ENSMUSP00000134510.2	Nonsense mediated decay		G3UZI6	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

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Summary

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