Gene: Lrrc4c ENSMUSG00000050587

Description

leucine rich repeat containing 4C [Source:MGI Symbol;Acc:MGI:2442636]

Gene Synonyms

6430556C10Rik, NGL-1, netrin g1 ligand

Location

Chromosome 2: 96,148,514-97,462,011 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 4 transcripts (splice variants), 254 orthologues, 22 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000135431.8	Lrrc4c-202	3646	640aa	ENSMUSP00000130984.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16460	Q8C031	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000059049.8	Lrrc4c-201	3492	640aa	ENSMUSP00000131795.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16460	Q8C031	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000162807.9	Lrrc4c-203	3132	640aa	ENSMUSP00000125218.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16460	Q8C031	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000170144.2	Lrrc4c-204	407	11aa	ENSMUSP00000128490.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9QA73	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Gene: Lrrc4c ENSMUSG00000050587

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Gene: Lrrc4c ENSMUSG00000050587

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