Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Lrp10 ENSMUSG00000022175

.

Description

low-density lipoprotein receptor-related protein 10 [Source:MGI Symbol;Acc:MGI:1929480]

Gene Synonyms

Lrp9

Location

Chromosome 14: 54,701,594-54,708,954 forward strand.

GRCm39:CM001007.3

About this gene

This gene has 4 transcripts (splice variants), 176 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022782.10	Lrp10-201	4228	713aa	ENSMUSP00000022782.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27089	Q7TQH7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228407.2	Lrp10-204	818	131aa	ENSMUSP00000154017.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQ24	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000227760.2	Lrp10-203	323	25aa	ENSMUSP00000154451.2	Nonsense mediated decay		A0A2I3BRF1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000226472.2	Lrp10-202	823	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

.

Summary

.

.