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- Splice variants
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Gene: 4931429L15Rik ENSMUSG00000056617

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Description

RIKEN cDNA 4931429L15 gene [Source:MGI Symbol;Acc:MGI:1921611]

Location

Chromosome 9: 46,214,659-46,231,284 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 3 transcripts (splice variants), 18 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000159565.8	4931429L15Rik-201	2037	379aa	ENSMUSP00000124991.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52785	E9PVU2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000172280.2	4931429L15Rik-203	1140	379aa	ENSMUSP00000128017.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52785	E9PVU2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000160795.2	4931429L15Rik-202	290	15aa	ENSMUSP00000123966.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E0CYQ9	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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