Gene: Nr5a1 ENSMUSG00000026751

Description

nuclear receptor subfamily 5, group A, member 1 [Source:MGI Symbol;Acc:MGI:1346833]

Gene Synonyms

Ad4BP, ELP, Ftz-F1, Ftzf1, SF-1, SF1, adrenal 4-binding protein, steroidogenic factor 1

Location

Chromosome 2: 38,582,668-38,604,554 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 3 transcripts (splice variants), 276 orthologues, 1 paralogue and is associated with 42 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000112883.8	Nr5a1-202	2994	462aa	ENSMUSP00000108504.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16011	P33242	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000028084.5	Nr5a1-201	2947	462aa	ENSMUSP00000028084.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16011	P33242	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000149690.2	Nr5a1-203	2069	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Nr5a1 ENSMUSG00000026751

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Gene: Nr5a1 ENSMUSG00000026751

Summary

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