Gene: Scn11a ENSMUSG00000034115

Description

sodium channel, voltage-gated, type XI, alpha [Source:MGI Symbol;Acc:MGI:1345149]

Gene Synonyms

NSS2, NaN, NaT, SNS2

Location

Chromosome 9: 119,582,825-119,654,522 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 2 transcripts (splice variants), 96 orthologues, 26 paralogues and is associated with 14 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000215718.2	Scn11a-202	5899	1765aa	ENSMUSP00000149420.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40804	Q9R053	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000070617.8	Scn11a-201	5837	1765aa	ENSMUSP00000065466.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40804	Q9R053	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Scn11a ENSMUSG00000034115

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Gene: Scn11a ENSMUSG00000034115

Summary

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