Gene: Upf1 ENSMUSG00000058301

Description

UPF1 regulator of nonsense transcripts homolog (yeast) [Source:MGI Symbol;Acc:MGI:107995]

Gene Synonyms

B430202H16Rik, PNORF-1, Rent1

Location

Chromosome 8: 70,784,175-70,805,928 reverse strand.

GRCm39:CM001001.3

About this gene

This gene has 2 transcripts (splice variants), 216 orthologues, 12 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000075666.8	Upf1-201	4618	1124aa	ENSMUSP00000075089.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52572	Q9EPU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000215817.2	Upf1-202	4518	1113aa	ENSMUSP00000148927.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9EPU0-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Upf1 ENSMUSG00000058301

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Gene: Upf1 ENSMUSG00000058301

Summary

About Us

Get help

Our sister sites

Follow us