LIM homeobox protein 9 [Source:MGI Symbol;Acc:MGI:1316721]
3110009O07Rik, LH2B, Lhx9 alpha
Chromosome 1: 138,752,924-138,776,315 reverse strand.
GRCm39:CM000994.3
This gene has 7 transcripts (splice variants), 203 orthologues, 21 paralogues and is associated with 19 phenotypes.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENSMUST00000112026.4 | Lhx9-204 | 2065 | 397aa | ENSMUSP00000107657.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS35726 | Q9WUH2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, |
| ENSMUST00000019374.14 | Lhx9-201 | 4937 | 330aa | ENSMUSP00000019374.8 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS15334 | Q9WUH2-4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, |
| ENSMUST00000112030.9 | Lhx9-205 | 4633 | 321aa | ENSMUSP00000107661.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS15333 | Q9WUH2-2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, |
| ENSMUST00000093486.10 | Lhx9-203 | 4551 | 321aa | ENSMUSP00000091198.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS15333 | Q9WUH2-2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, |
| ENSMUST00000046870.13 | Lhx9-202 | 3645 | 388aa | ENSMUSP00000036480.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9WUH2-1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENSMUST00000194557.2 | Lhx9-207 | 1058 | 75aa | ENSMUSP00000142268.2 | Nonsense mediated decay | A0A0A6YY42 | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENSMUST00000192425.2 | Lhx9-206 | 1946 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, |
