Description

histocompatibility 2, D region locus 1 [Source:MGI Symbol;Acc:MGI:95896]

Location
INSDC coordinates

chromosome:GRCm38:CM001010.2:35262730:35267499:1

About this gene

This gene has 4 transcripts (splice variants), 127 orthologues, 32 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
H2-D1-001ENSMUST000001727852102362aaENSMUSP00000134570
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS57074P01899 Q792Z7 NM_010380
NP_001254737
NP_034510
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

H2-D1-004ENSMUST0000017250340695aaENSMUSP00000134582
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UZP7 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

H2-D1-003ENSMUST0000017316739190aaENSMUSP00000133518
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UX20 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

H2-D1-005ENSMUST00000174325716No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays