Description

shroom family member 4 [Source:MGI Symbol;Acc:MGI:2685570]

Location
INSDC coordinates

chromosome:GRCm38:CM001013.2:6399854:6637448:1

About this gene

This gene has 3 transcripts (splice variants), 63 orthologues, 3 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Shroom4-004ENSMUST0000010300548391475aaENSMUSP00000100070
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS29959E9PUX3 Q1W617 NM_001040459
NP_001035549
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Shroom4-001ENSMUST0000008952082011359aaENSMUSP00000086949
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q1W617 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Shroom4-002ENSMUST00000143641755200aaENSMUSP00000131806
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PUX3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays