Description

homeobox B8 [Source:MGI Symbol;Acc:MGI:96189]

Location
INSDC coordinates

chromosome:GRCm38:CM001004.2:96281905:96285315:1

About this gene

This gene has 3 transcripts (splice variants), 45 orthologues, 14 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Hoxb8-001ENSMUST000000526502635243aaENSMUSP00000052496
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS25293A2A9Z8 P09632 NM_010461
NP_034591
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Hoxb8-201ENSMUST000001680431141243aaENSMUSP00000128136
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS25293A2A9Z8 P09632 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Hoxb8-002ENSMUST00000125410664191aaENSMUSP00000120351
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6W0B3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays