Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Spatc1 ENSMUSG00000049653

.

Description

spermatogenesis and centriole associated 1 [Source:MGI Symbol;Acc:MGI:1921531]

Gene Synonyms

1700084J23Rik, speriolin

Location

Chromosome 15: 76,152,289-76,176,772 forward strand.

GRCm39:CM001008.3

About this gene

This gene has 2 transcripts (splice variants), 139 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000074173.4	Spatc1-201	1605	480aa	ENSMUSP00000073805.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27564	A0A0R4J0X4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230221.2	Spatc1-202	1664	327aa	ENSMUSP00000155378.2	Nonsense mediated decay		A0A2R8VKD1	-

.

Summary

.

.