Description

retinal degeneration 3 [Source:MGI Symbol;Acc:MGI:1921273]

INSDC coordinates

chromosome:GRCm38:CM000994.2:191977370:191988283:1

About this gene

This gene has 5 transcripts (splice variants), 58 orthologues, 1 paralogue and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Rd3-201ENSMUST000000534633720310aaENSMUSP00000050188
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15626K3W4N1 NM_001177900
NM_023727
NP_001171371
NP_076216
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Rd3-003ENSMUST000001804633724195aaENSMUSP00000138049
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8BRE0 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Rd3-001ENSMUST000001756801969105aaENSMUSP00000135650
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q05D96 NP_001290061
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Rd3-002ENSMUST000001815121760105aaENSMUSP00000137756
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q05D96 NP_001290061
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Rd3-004ENSMUST000001925472223No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays