Description

centrin 4 [Source:MGI Symbol;Acc:MGI:2677454]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:37307749:37312708:1

About this gene

This gene has 5 transcripts (splice variants), 45 orthologues, 4 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Cetn4-001ENSMUST000001029551064168aaENSMUSP00000100020
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17318Q8K4K1 NM_145825
NP_665824
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Cetn4-004ENSMUST000001409562981116aaENSMUSP00000132689
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A0MQN3 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cetn4-002ENSMUST000000714001808125aaENSMUSP00000071349
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8K4K1 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cetn4-005ENSMUST00000075537762122aaENSMUSP00000074975
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8K4K1 -TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cetn4-003ENSMUST0000012525259287aaENSMUSP00000129410
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PVN5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays