Description

centrin 4 [Source:MGI Symbol;Acc:MGI:2677454]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:37307749:37312708:1

About this gene

This gene has 5 transcripts (splice variants), 20 orthologues, 4 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Cetn4-001ENSMUST000001029551064168aaENSMUSP00000100020
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17318E9PVN5 Q8K4K1 NM_145825
NP_665824
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Cetn4-004ENSMUST000001409562981116aaENSMUSP00000132689
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PVN5 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cetn4-002ENSMUST000000714001808125aaENSMUSP00000071349
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8K4K1 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cetn4-005ENSMUST00000075537762122aaENSMUSP00000074975
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8K4K1 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cetn4-003ENSMUST0000012525259287aaENSMUSP00000129410
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PVN5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays