Gene: Six5 ENSMUSG00000040841

Description

sine oculis-related homeobox 5 [Source:MGI Symbol;Acc:MGI:106220]

Gene Synonyms

Dmahp, MDMAHP, TrexBF

Location

GRCm39:CM001000.3

About this gene

This gene has 1 transcript (splice variant), 256 orthologues, 5 paralogues and is associated with 15 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000049454.6	Six5-201	3007	719aa	ENSMUSP00000045973.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20889	P70178	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary