Description

autophagy related 7 [Source:MGI Symbol;Acc:MGI:1921494]

INSDC coordinates

chromosome:GRCm38:CM000999.2:114643097:114860614:1

About this gene

This gene has 15 transcripts (splice variants), 66 orthologues and is a member of 3 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Atg7-006ENSMUST000001693103895741aaENSMUSP00000133215
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59697S4R1K1 S4R1N8 S4R1U3
S4R2P7
NM_001253717
NP_001240646
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Atg7-001ENSMUST000000324573761698aaENSMUSP00000032457
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39598Q9D906 S4R1K1 S4R1N8
S4R1U3 S4R2P7
NM_001253718
NM_028835
NP_001240647
NP_083111
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Atg7-005ENSMUST000001829022543698aaENSMUSP00000138651
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39598Q9D906 S4R1K1 S4R1N8
S4R1U3 S4R2P7
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Atg7-004ENSMUST000001827932459698aaENSMUSP00000138137
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39598Q9D906 S4R1K1 S4R1N8
S4R1U3 S4R2P7
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Atg7-003ENSMUST000001824282264671aaENSMUSP00000138779
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-S4R1K1 S4R1N8 S4R1U3
S4R2P7 S4R2T5
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Atg7-002ENSMUST000001831652012618aaENSMUSP00000138600
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-S4R1K1 S4R1U3 S4R2D5
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Atg7-009ENSMUST00000182034784232aaENSMUSP00000138358
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-S4R1K1 S4R1N8 S4R1T0
S4R1U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atg7-011ENSMUST00000182035758222aaENSMUSP00000138731
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-S4R1K1 S4R1N8 S4R1U3
S4R2P7
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atg7-008ENSMUST00000182510650172aaENSMUSP00000138300
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-S4R1K1 S4R1N8 S4R1U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atg7-012ENSMUST00000182169462110aaENSMUSP00000138404
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-S4R1K1 S4R1U3 S4R1W9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atg7-010ENSMUST0000018277135365aaENSMUSP00000138374
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-S4R1K1 S4R1U3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atg7-007ENSMUST0000018209834041aaENSMUSP00000138253
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-S4R1K1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atg7-014ENSMUST00000182860590No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atg7-015ENSMUST00000182934408No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Atg7-013ENSMUST00000183127966No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays