Description

sarcospan [Source:MGI Symbol;Acc:MGI:1353511]

INSDC coordinates

chromosome:GRCm38:CM000999.2:145931641:145965223:1

About this gene

This gene has 3 transcripts (splice variants), 58 orthologues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Sspn-001ENSMUST000000323834431216aaENSMUSP00000032383
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS20698Q3TRE0 NM_010656
NP_034786
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Sspn-003ENSMUST000001117014512140aaENSMUSP00000107330
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q8Y7 -TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Sspn-002ENSMUST000001117024415140aaENSMUSP00000107331
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q8Y7 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays