Gene: Bbs4 ENSMUSG00000025235

Description

Bardet-Biedl syndrome 4 (human) [Source:MGI Symbol;Acc:MGI:2143311]

Gene Synonyms

D9Ertd464e

Location

Chromosome 9: 59,229,273-59,260,791 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues, 14 paralogues and is associated with 85 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000026265.8	Bbs4-201	2518	520aa	ENSMUSP00000026265.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40658	A6H669 Q8C1Z7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000217367.2	Bbs4-204	538	150aa	ENSMUSP00000150973.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1L1SV19	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000214832.2	Bbs4-203	596	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000214225.2	Bbs4-202	3757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Gene: Bbs4 ENSMUSG00000025235

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Gene: Bbs4 ENSMUSG00000025235

Summary

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