Description

paired box 2 [Source:MGI Symbol;Acc:MGI:97486]

Location
INSDC coordinates

chromosome:GRCm38:CM001012.2:44756045:44837871:1

About this gene

This gene has 3 transcripts (splice variants), 77 orthologues, 8 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Pax2-001ENSMUST000001744904358394aaENSMUSP00000134661
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS37998-NM_011037
NP_035167
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Pax2-201ENSMUST000000043403095416aaENSMUSP00000004340
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3X8Q7 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Pax2-004ENSMUST000001733461814303aaENSMUSP00000134311
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UZ20 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays