Description

membrane-associated ring finger (C3HC4) 2 [Source:MGI Symbol;Acc:MGI:1925915]

Location
INSDC coordinates

chromosome:GRCm38:CM001010.2:33685692:33718670:1

About this gene

This gene has 10 transcripts (splice variants), 68 orthologues, 4 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
March2-001ENSMUST000000661213400287aaENSMUSP00000065225
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS28627G3UYX1 Q8CA25 NM_145486
NP_663461
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
March2-201ENSMUST000001860222470287aaENSMUSP00000139724
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS28627G3UYX1 Q8CA25 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
March2-004ENSMUST000001727671381246aaENSMUSP00000134220
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS57064G3UYX1 Q99M02 NM_001252480
NP_001239409
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
March2-005ENSMUST000001733292566197aaENSMUSP00000133825
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UXU1 G3UYX1 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
March2-006ENSMUST000001730151418232aaENSMUSP00000133802
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UXS1 G3UYX1 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
March2-008ENSMUST00000174040811217aaENSMUSP00000134437
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UXU1 G3UYX1 G3UZC4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

March2-007ENSMUST00000173454690177aaENSMUSP00000133940
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UY44 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

March2-009ENSMUST0000017339235682aaENSMUSP00000134255
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UYX1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

March2-002ENSMUST000001676112470287aaENSMUSP00000127601
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
CCDS28627G3UYX1 Q8CA25 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

March2-003ENSMUST000001729342481242aaENSMUSP00000134026
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-G3UYC2 G3UYX1 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays