Description

casein beta [Source:MGI Symbol;Acc:MGI:88541]

Location
INSDC coordinates

chromosome:GRCm38:CM000998.2:87692624:87699630:1

About this gene

This gene has 11 transcripts (splice variants), 39 orthologues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Csn2-001ENSMUST000001974221329231aaENSMUSP00000143341
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39131-NM_009972
NP_034102
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Csn2-004ENSMUST000000823701117230aaENSMUSP00000080976
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-P10598 Q8BGL0 NM_001286020
NM_001286021
NP_001272949
NP_001272950
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Csn2-006ENSMUST00000199624890231aaENSMUSP00000143409
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Csn2-009ENSMUST00000196869879215aaENSMUSP00000142971
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_001286023
NM_001286024
NP_001272952
NP_001272953
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Csn2-007ENSMUST00000198057827230aaENSMUSP00000143709
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8BGL0 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Csn2-010ENSMUST00000196163722223aaENSMUSP00000142673
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_001286022
NP_001272951
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Csn2-011ENSMUST00000196664723No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
Csn2-005ENSMUST000002006273945No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Csn2-003ENSMUST000001972812912No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Csn2-002ENSMUST000001976871613No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Csn2-008ENSMUST00000199716256No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---

Gene-based displays