Description

ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686]

INSDC coordinates

chromosome:GRCm38:CM000996.2:130726831:130730398:1

About this gene

This gene has 8 transcripts (splice variants), 63 orthologues, 1 paralogue and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Rpl34-001ENSMUST00000062601624117aaENSMUSP00000086614
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17841Q9D1R9 NM_026724
NP_001186279
NP_001274510
NP_081000
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Rpl34-002ENSMUST00000079085480117aaENSMUSP00000078092
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17841Q9D1R9 NM_001005859
NP_001005859
NP_001186279
NP_001274510
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Rpl34-006ENSMUST00000200517123260aaENSMUSP00000143752
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rpl34-003ENSMUST0000013380271190aaENSMUSP00000142951
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Rpl34-005ENSMUST00000196202495117aaENSMUSP00000142486
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NP_001186279
NP_001274510
CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Rpl34-007ENSMUST00000199911766No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Rpl34-008ENSMUST00000199001573No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Rpl34-004ENSMUST00000135691477No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays