Description

lin-9 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:1919818]

INSDC coordinates

chromosome:GRCm38:CM000994.2:180641150:180690694:1

About this gene

This gene has 10 transcripts (splice variants), 67 orthologues and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Lin9-201ENSMUST000000858032991542aaENSMUSP00000082959
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48468Q8C735 NM_001103182
NP_001096652
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Lin9-001ENSMUST000001925613160558aaENSMUSP00000141331
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YVZ7 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Lin9-007ENSMUST000001927252878518aaENSMUSP00000141503
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWD3 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Lin9-002ENSMUST000001938922948272aaENSMUSP00000141530
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A6YWF7 -
Lin9-009ENSMUST0000019463864473aaENSMUSP00000142096
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A6YXQ9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Lin9-008ENSMUST00000194373708No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Lin9-003ENSMUST000001931622551No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Lin9-006ENSMUST000001948472037No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Lin9-005ENSMUST000001917442017No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Lin9-004ENSMUST000000858041660No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays