Description

speedy homolog A (Xenopus laevis) [Source:MGI Symbol;Acc:MGI:1918141]

Location
INSDC coordinates

chromosome:GRCm38:CM001010.2:71552061:71589533:1

About this gene

This gene has 4 transcripts (splice variants), 54 orthologues, 3 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Spdya-201ENSMUST000001676411891310aaENSMUSP00000125912
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50178Q5IBH7 NM_029254
NP_083530
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
Spdya-003ENSMUST000001240011247283aaENSMUSP00000118426
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50179B2RWC8 Q5IBH7 NM_001142631
NP_001136103
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Spdya-002ENSMUST00000144142933310aaENSMUSP00000118994
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50178Q5IBH7 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
Spdya-001ENSMUST000000644201877309aaENSMUSP00000063214
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B8JJB9 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Gene-based displays