Description

SRY (sex determining region Y)-box 6 [Source:MGI Symbol;Acc:MGI:98368]

INSDC coordinates

chromosome:GRCm38:CM001000.2:115471344:116038744:1

About this gene

This gene has 5 transcripts (splice variants), 69 orthologues, 3 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Sox6-201ENSMUST000000728048227827aaENSMUSP00000072583
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS40098P40645 Q3V1J7 NM_011445
NP_035575
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
Sox6-202ENSMUST000001066128193785aaENSMUSP00000102223
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS40097Q8BSS6 NM_001025560
NM_001277328
NP_001020731
NP_001264257
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Sox6-204ENSMUST000001668778079787aaENSMUSP00000129512
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS52369E9PUW0 NM_001025559
NP_001020730
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Sox6-205ENSMUST000001691295100787aaENSMUSP00000126404
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS52369E9PUW0 NM_001277327
NP_001264256
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Sox6-203ENSMUST000001662072825827aaENSMUSP00000129027
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS40098P40645 Q3V1J7 NM_001277326
NP_001264255
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website

Gene-based displays