Description

sodium channel, voltage-gated, type III, beta [Source:MGI Symbol;Acc:MGI:1918882]

Location
INSDC coordinates

chromosome:GRCm38:CM001002.2:40269216:40291618:1

About this gene

This gene has 9 transcripts (splice variants), 65 orthologues, 1 paralogue, is a member of 1 Ensembl protein family and is associated with 3 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Scn3b-201ENSMUST000001149564515215aaENSMUSP00000110606
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23080C3VDI5 C3VDI6 H3BJ27
H3BJR6 Q0P666 Q69ZQ3
Q8BHK2
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Scn3b-001ENSMUST000000499414150215aaENSMUSP00000051627
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23080C3VDI5 C3VDI6 H3BJ27
H3BJR6 Q0P666 Q69ZQ3
Q8BHK2
NM_001083917
NM_178227
NP_001077386
NP_839941
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Scn3b-008ENSMUST000001761854090175aaENSMUSP00000135096
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS72214C3VDI5 C3VDI6 H3BJR6
NM_001286614
NP_001273543
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Scn3b-003ENSMUST000001718354024215aaENSMUSP00000132933
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23080C3VDI5 C3VDI6 H3BJ27
H3BJR6 Q0P666 Q69ZQ3
Q8BHK2
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Scn3b-005ENSMUST00000175949924206aaENSMUSP00000134820
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C3VDI5 C3VDI6 H3BJ27
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Scn3b-004ENSMUST00000176547672120aaENSMUSP00000135470
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C3VDI6 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Scn3b-007ENSMUST00000176169704No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Scn3b-002ENSMUST000001758731507No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Scn3b-006ENSMUST00000176634600No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays