Description

nucleoporin 62 [Source:MGI Symbol;Acc:MGI:1351500]

Location
INSDC coordinates

chromosome:GRCm38:CM001000.2:44816088:44830809:1

About this gene

This gene has 3 transcripts (splice variants), 45 orthologues, 1 paralogue and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Nup62-001ENSMUST000000571952719526aaENSMUSP00000056785
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS21216Q5FWJ9 Q63850 NM_053074
NP_444304
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Nup62-002ENSMUST000001078912708526aaENSMUSP00000103523
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS21216Q5FWJ9 Q63850 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Nup62-003ENSMUST0000013686133442aaENSMUSP00000134421
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UZB1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays