Description

special AT-rich sequence binding protein 2 [Source:MGI Symbol;Acc:MGI:2679336]

Location
INSDC coordinates

chromosome:GRCm38:CM000994.2:56793981:56978650:1

About this gene

This gene has 5 transcripts (splice variants), 69 orthologues, 1 paralogue and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Satb2-001ENSMUST000001144155805733aaENSMUSP00000110057
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14965Q546B3 Q8VI24 NM_139146
NP_631885
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Satb2-002ENSMUST000000428576277674aaENSMUSP00000046067
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8VI24 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Satb2-003ENSMUST000001774244694615aaENSMUSP00000135391
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BKH3 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Satb2-004ENSMUST0000017728245427aaENSMUSP00000135542
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BKV4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Satb2-005ENSMUST00000176759331104aaENSMUSP00000135163
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BJX4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays