Description

synovial sarcoma translocation, Chromosome 18 [Source:MGI Symbol;Acc:MGI:107708]

Location
INSDC coordinates

chromosome:GRCm38:CM001011.2:14624198:14682914:1

About this gene

This gene has 3 transcripts (splice variants), 64 orthologues, 2 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Ss18-202ENSMUST000000409644153344aaENSMUSP00000047867
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50225Q8BKL1 NM_001161370
NP_001154842
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Ss18-201ENSMUST000000409243090418aaENSMUSP00000046320
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS29070Q62280 NM_009280
NP_033306
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ss18-203ENSMUST000000920412997387aaENSMUSP00000089673
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS57116Q8BJJ6 NM_001161369
NM_001161371
NP_001154841
NP_001154843
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays