Description

fibroblast growth factor 1 [Source:MGI Symbol;Acc:MGI:95515]

Location
INSDC coordinates

chromosome:GRCm38:CM001011.2:38838673:38929404:1

About this gene

This gene has 7 transcripts (splice variants), 56 orthologues, 1 paralogue and is a member of 5 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Fgf1-001ENSMUST000000406473981155aaENSMUSP00000045710
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS29204D3Z192 D3Z6E2 P61148
Q6ZWS1 Q71UP6
NM_010197
NP_034327
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Fgf1-002ENSMUST000001155822449155aaENSMUSP00000111245
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS29204D3Z192 D3Z6E2 P61148
Q6ZWS1 Q71UP6
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Fgf1-007ENSMUST0000011756641860aaENSMUSP00000113292
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z192 D3Z6H1 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Fgf1-006ENSMUST0000013486438449aaENSMUSP00000122105
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z192 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Fgf1-004ENSMUST0000013997234678aaENSMUSP00000122390
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z192 D3Z6E2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Fgf1-003ENSMUST00000131348398378aaENSMUSP00000123293
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D3Z192 D6RCX9 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Fgf1-005ENSMUST00000147607342No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays