Description

chondroitin sulfate proteoglycan 5 [Source:MGI Symbol;Acc:MGI:1352747]

INSDC coordinates

chromosome:GRCm38:CM001002.2:110243783:110262576:1

About this gene

This gene has 5 transcripts (splice variants), 55 orthologues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Cspg5-001ENSMUST000000350583870566aaENSMUSP00000035058
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS52936Q71M36 NM_001166273
NP_001159745
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Cspg5-003ENSMUST000001978507868569aaENSMUSP00000143005
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cspg5-002ENSMUST000001960603790539aaENSMUSP00000143164
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_013884
NP_038912
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cspg5-005ENSMUST000001997362107458aaENSMUSP00000142845
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cspg5-004ENSMUST000001961761523No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---

Gene-based displays